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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6320673_6321904_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6320673 - 6321904
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTTTTTTACA
Flanking Amino Acid:
NHREDGILTKLICKVSTLRA
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
92.8
0.96
0.7
88.1
28.6
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
66.6
0.51
1.5
76.69
33.7

Associated Gene:

Gene:
RORA
Ensembl Gene ID:
ENSAPLG00000005866
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006076
6320508 - 6343865
23358