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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6324700_6324750_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6324700 - 6324750
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTTGCAT
5'SS Class:
weak_major
3'SS Sequence:
AGAAGAGCAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACCACAGAATA
Flanking Amino Acid:
VFKSLGKEMSKTAALKKSAC
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.1
53.9
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
38.7
-0.6
1.6
25.5
35.8
Minor 5ss
34.8
-1.7
3.4
46.7
43.3
Minor BPS
42.1
-0.6
1.7
47.92
35.1

Associated Gene:

Gene:
RORA
Ensembl Gene ID:
ENSAPLG00000005866
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006076
6320508 - 6343865
23358