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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6324874_6325636_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6324874 - 6325636

Intron Length:

763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGGG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

CTCTACTTAAAT

Flanking Amino Acid:

QNDQIVLLKAGSLEVVFIRM

Intron Amino Acid Position:

328

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

68.8

42.3

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

79.3

0.66

0.9

77.4

36.9

Minor 5ss

38.2

-1.3

3.1

49.2

47.1

Minor BPS

64.9

0.54

1.7

78.16

43.8

Associated Gene:

Gene:

RORA

Ensembl Gene ID:

ENSAPLG00000005866

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006076

6320508 - 6343865

23358