About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6325770_6327200_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6325770 - 6327200
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAAAC
Flanking Amino Acid:
QEEIENYQNKQREVMWQLCA
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74
0.54
0.9
70.3
34.1
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
62
0.35
1.7
71.5
39.6

Associated Gene:

Gene:
RORA
Ensembl Gene ID:
ENSAPLG00000005866
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006076
6320508 - 6343865
23358