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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6327323_6330489_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6327323 - 6330489
Intron Length:
3167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
GTCTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTGTATAACT
Flanking Amino Acid:
TSPTVSMAELEHLAQNISKS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.6
0.73
0.7
81.2
30.9
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
52.8
0.17
2
74.95
42

Associated Gene:

Gene:
RORA
Ensembl Gene ID:
ENSAPLG00000005866
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006076
6320508 - 6343865
23358