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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6330886_6332262_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6330886 - 6332262

Intron Length:

1377

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCTCT

5'SS Class:

strong_major

3'SS Sequence:

GTCTGTATTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

ATTTATAGAAAT

Flanking Amino Acid:

KCLAVGMSRDAVKFGRMSKK

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

74.1

37.2

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

77.4

0.62

0.9

73.7

40.6

Minor 5ss

46.6

-0.3

2.8

62.9

42.7

Minor BPS

46.8

-0.1

1.9

71.08

38.9

Associated Gene:

Gene:

RORA

Ensembl Gene ID:

ENSAPLG00000005866

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006076

6320508 - 6343865

23358