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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6332405_6341102_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6332405 - 6341102
Intron Length:
8698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TATTACACAATT
Flanking Amino Acid:
YGVITCEGCKGFFRRSQQSN
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
73
0.52
0.9
64
41.7
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
50.8
0.1
2
76.05
40

Associated Gene:

Gene:
RORA
Ensembl Gene ID:
ENSAPLG00000005866
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006076
6320508 - 6343865
23358