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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6341225_6343798_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6341225 - 6343798

Intron Length:

2574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAAGGAC

5'SS Class:

major

3'SS Sequence:

AGGTGTTTAAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

AGGTGTTTAAAA

Flanking Amino Acid:

PVNLSRFSSNKNVINWLRVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.6

0.25

1.1

54.8

36.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

53.2

0.07

1.2

53.1

44.7

Minor 5ss

31.1

-2.2

3.7

45.6

44.1

Minor BPS

49.9

-0

1.9

59.52

40.3

Associated Gene:

Gene:

RORA

Ensembl Gene ID:

ENSAPLG00000005866

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006076

6320508 - 6343865

23358