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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6857422_6860657_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6857422 - 6860657

Intron Length:

3236

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAA|GCTTTTATT

5'SS Class:

weak_major

3'SS Sequence:

TATTGTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CAAACTTTAATC

Flanking Amino Acid:

VLKITVLVRKSICSAIMEAQ

Intron Amino Acid Position:

3522

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.1

0.03

1.4

66.9

44.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

86.1

0.81

0.8

80.1

37.1

Minor 5ss

35.6

-1.6

3.8

52.7

38.1

Minor BPS

60.9

0.32

1.3

60.94

38.5

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047562

6857320 - 6944542

87223