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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6857482_6860657_R

Intron Information:

Intron Rank:
74
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6857482 - 6860657
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCTTTTATT
5'SS Class:
weak_major
3'SS Sequence:
AGCCAATGCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GTATATTTAACT
Flanking Amino Acid:
VLKITVLVRKVGFASICSAI
Intron Amino Acid Position:
3498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.1
0.03
1.4
66.9
44.5
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
50.2
0.01
1
43.2
36.7
Minor 5ss
35.6
-1.6
3.8
52.7
38.1
Minor BPS
71.1
0.74
1.4
82.91
37.7

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005335
6857320 - 6944542
87223