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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6860405_6860666_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6860405 - 6860666

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTGCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTACAT

U12 Branch Point Sequence:

GTCACCTGAACT

Flanking Amino Acid:

EGSVLKITVLDQRMFHRKDS

Intron Amino Acid Position:

3392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.7

29.9

Major BPS

61.4

0.28

1.1

36.5

Major PPT

66.1

0.36

0.9

60.9

33.9

Minor 5ss

32.9

-1.9

2.9

37.3

41.2

Minor BPS

66.7

0.6

1.5

78.88

42.6

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034128

6860267 - 6944542

84276