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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6860772_6862055_R

Intron Information:

Intron Rank:
72
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6860772 - 6862055
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCTCCTAA
5'SS Class:
weak_major
3'SS Sequence:
GATATATGTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAACA
Flanking Amino Acid:
IVTNRYLALKEVEILGHLTT
Intron Amino Acid Position:
3413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.3
45.6
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
54.3
0.1
1.2
52.7
45
Minor 5ss
39.9
-1.1
3.9
55.8
48.5
Minor BPS
72.9
0.72
1.4
79.77
36.3

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223