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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6862164_6866950_R

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6862164 - 6866950
Intron Length:
4787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTCATTT
Flanking Amino Acid:
VEAEGYDLFEKLHIRKLEKE
Intron Amino Acid Position:
3423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
100
1.24
0.5
100
0
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
48.2
-0
1.7
65.49
40.1

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223