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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6867066_6867659_R

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6867066 - 6867659
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
TATTGCTCCATT
Flanking Amino Acid:
MASSTFQGIQRVAESTEEVS
Intron Amino Acid Position:
3384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.8
42.1
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
76.3
0.59
1
73.4
37
Minor 5ss
33
-1.9
3.3
48.4
47.1
Minor BPS
47.5
-0.1
2.3
73.19
44

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223