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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6867784_6869899_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6867784 - 6869899
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
VTGIITKPVEGAKKEGAAGF
Intron Amino Acid Position:
3343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
77.7
0.62
1
78.4
33.9
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223