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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6871216_6871447_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6871216 - 6871447
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
VEAFFYEPFQGAVQGPEEFA
Intron Amino Acid Position:
3248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73.4
0.53
1
66
44.2
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223