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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6872093_6872381_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6872093 - 6872381

Intron Length:

289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

ACTTGTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TGTTCAATAACG

Flanking Amino Acid:

TLTDVDDLIFKLAFFQIKYQ

Intron Amino Acid Position:

3182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

73.9

32.9

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

81.1

0.7

0.9

77.4

36.3

Minor 5ss

44.9

-0.5

2.8

55.6

43.2

Minor BPS

59.1

0.15

41.2

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005335

6857320 - 6944542

87223

ENSAPLT00000047562

6857320 - 6944542

87223

ENSAPLT00000034428

6857320 - 6944542

87223

ENSAPLT00000034128

6860267 - 6944542

84276