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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6872519_6873074_R

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6872519 - 6873074
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTTTGTTTAACT
Flanking Amino Acid:
FELFHISPIKLHLSLSLASG
Intron Amino Acid Position:
3137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.7
0.67
1
76.3
37.8
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
73
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223