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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6878660_6879043_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6878660 - 6879043
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACT
Flanking Amino Acid:
TSWDSLRYKQSGLQEEMELK
Intron Amino Acid Position:
2792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.1
0.7
0.8
75.3
33.3
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
73.3
0.81
1.6
92.08
30.2

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223