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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6886815_6887551_R

Intron Information:

Intron Rank:
46
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6886815 - 6887551
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGAAAGT
5'SS Class:
weak_major
3'SS Sequence:
AGATCTTCAAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AGATCTTCAAGA
Flanking Amino Acid:
NSVEKANVNLFTAFKLEFSL
Intron Amino Acid Position:
2170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.2
0.08
1.1
54.4
42.5
Major BPS
75.8
0.64
1
65.8
41
Major PPT
47.2
-0.1
1.7
51.5
42
Minor 5ss
35.7
-1.6
3.5
53.9
44.6
Minor BPS
49.6
-0
1.8
59.76
39.9

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276