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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6887705_6888662_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6887705 - 6888662
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTA
5'SS Class:
major
3'SS Sequence:
TTCTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTAATTTAATT
Flanking Amino Acid:
CLAVFSNLAKAFSEGTASTF
Intron Amino Acid Position:
2204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
70.8
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.5
0.82
0.7
81.5
28.8
Minor 5ss
41.5
-0.9
3.1
56.7
47.4
Minor BPS
65.5
0.57
1.5
80.14
35.6

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223