About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6888819_6889230_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6888819 - 6889230
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTTGGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCATAATT
Flanking Amino Acid:
GKKQWRLKLEMKSNPVQERS
Intron Amino Acid Position:
2152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.6
0.6
0.9
74
41
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
64.1
0.52
1.6
78.79
37.6

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223