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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6889321_6890266_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6889321 - 6890266
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
ATTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCATACTTAATT
Flanking Amino Acid:
MEVSADMSLEVHYYNETFAV
Intron Amino Acid Position:
2122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.2
0.75
0.7
82
29.2
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
71.9
0.77
1.5
81.85
39.7

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223