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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6890633_6891616_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6890633 - 6891616

Intron Length:

984

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTAG

5'SS Class:

strong_major

3'SS Sequence:

GTTGTTGTTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

TTTTGAGTAATA

Flanking Amino Acid:

VLTVEELVIKISPIILNTVG

Intron Amino Acid Position:

2000

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.6

1.07

0.7

30.2

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

66.8

0.38

1.2

63.8

46.3

Minor 5ss

39.5

-1.2

2.8

48.7

47.5

Minor BPS

47.7

-0.1

2.5

72.1

40.4

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034128

6860267 - 6944542

84276

ENSAPLT00000005335

6857320 - 6944542

87223

ENSAPLT00000047562

6857320 - 6944542

87223

ENSAPLT00000034428

6857320 - 6944542

87223