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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6894192_6894732_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6894192 - 6894732
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTATTAAACT
Flanking Amino Acid:
LREGIQNVTQRMIDKKYDTN
Intron Amino Acid Position:
1807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.1
0.79
0.8
76.9
36.6
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
62.4
0.47
1.8
82.03
39.3

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223