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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6894900_6895891_R

Intron Information:

Intron Rank:
39
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6894900 - 6895891
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGAC
5'SS Class:
major
3'SS Sequence:
CATTATATAGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATAT
Flanking Amino Acid:
VILYNRDMNQSPLLLHSDRL
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
34.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
57.5
0.17
1.2
58.4
40.4
Minor 5ss
35.4
-1.7
3
43.7
44.1
Minor BPS
56.1
0.27
2
78.55
43.3

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223