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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6895984_6896834_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6895984 - 6896834
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
AGTGTTTCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAC
U12 Branch Point Sequence:
TGCTTTTGGACA
Flanking Amino Acid:
KVSNESDSSEVESSAERYET
Intron Amino Acid Position:
1673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
72.9
34.5
Major BPS
61.5
0.29
1.4
63.1
44.5
Major PPT
76.7
0.6
0.9
69.4
41.2
Minor 5ss
45.2
-0.5
2.5
48.8
47.3
Minor BPS
53.5
0.1
1.4
62.82
37.5

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223