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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6896023_6896912_R

Intron Information:

Intron Rank:
37
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6896023 - 6896912
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACTCTGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTATCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCAACA
Flanking Amino Acid:
ENLGGASSQPNPLLAFGQES
Intron Amino Acid Position:
1620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.1
50.8
41.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.9
78.6
33.7
Minor 5ss
44.9
-0.5
3.1
58.8
43.8
Minor BPS
64.9
0.46
1.8
80.76
34.4

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276