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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6899694_6900172_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6899694 - 6900172
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTGT
5'SS Class:
major
3'SS Sequence:
CTTAATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGAGTTTTAACT
Flanking Amino Acid:
NVDPKTIHKKAVSIMGDEVF
Intron Amino Acid Position:
1453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.4
38.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.1
0.56
0.9
66.2
40.3
Minor 5ss
33.1
-1.9
3.3
47.4
48
Minor BPS
60.8
0.42
1.4
69.7
41.2

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276