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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6900277_6900843_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6900277 - 6900843
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTATCTCAAAT
Flanking Amino Acid:
TCRIADIRIQGMDASVAVKT
Intron Amino Acid Position:
1418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
66.3
0.37
1
65
39.9
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
56.4
0.28
1.7
74.03
42.5

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276