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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6900961_6902004_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6900961 - 6902004

Intron Length:

1044

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGCTCTCA

5'SS Class:

weak_major

3'SS Sequence:

TTTTCCCATCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

TTGTATGTCACT

Flanking Amino Acid:

KPQIEEQEKGMSGNATHDDI

Intron Amino Acid Position:

1404

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.1

0.12

1.1

51.4

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

82.4

0.73

0.8

74.7

35.3

Minor 5ss

39.4

-1.2

3.1

47.4

46.1

Minor BPS

45.5

-0.2

2.5

72.11

45.1

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047562

6857320 - 6944542

87223