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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6902156_6904250_R

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6902156 - 6904250
Intron Length:
2095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCAATA
5'SS Class:
weak_major
3'SS Sequence:
GCCCTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TTGCCCTTATTT
Flanking Amino Acid:
EHLLKMEYIKVVFSSLDLVL
Intron Amino Acid Position:
1324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.3
65.5
40
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
72.2
0.5
0.9
69.6
35.4
Minor 5ss
45
-0.5
2.6
58.7
45.5
Minor BPS
67.2
0.62
1.6
81.35
40.6

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223