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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6904331_6905126_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6904331 - 6905126
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTTCTTGATT
Flanking Amino Acid:
KITMRCTEITDSNGDPLCII
Intron Amino Acid Position:
1297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.2
0.75
0.8
77.1
36.1
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
77.9
0.96
1
87.31
31.7

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276