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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6905312_6906524_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6905312 - 6906524
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCCAGTACT
5'SS Class:
major
3'SS Sequence:
TTTACTGAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTTACTGAAAT
Flanking Amino Acid:
GEAEDKQAHANELNSFSIFK
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
82.9
28.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
62.9
0.29
1
59.3
40.8
Minor 5ss
25.2
-2.9
3.6
36.1
33.5
Minor BPS
66.9
0.61
1.7
87.91
36.3

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276