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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6906603_6907430_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6906603 - 6907430

Intron Length:

828

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGGTGAGT

5'SS Class:

weak_major

3'SS Sequence:

AGGTTGCAGTAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TGATCTGCAATT

Flanking Amino Acid:

DTMNVSLVKRNQEDLNVFLK

Intron Amino Acid Position:

1197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.1

42.7

Major BPS

0.85

0.9

39.9

Major PPT

47.2

-0.1

1.2

46.4

44.9

Minor 5ss

28.9

-2.4

3.4

38.9

Minor BPS

48.2

-0

2.1

69.64

41.7

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005335

6857320 - 6944542

87223

ENSAPLT00000047562

6857320 - 6944542

87223

ENSAPLT00000034428

6857320 - 6944542

87223

ENSAPLT00000034128

6860267 - 6944542

84276