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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6908203_6908978_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6908203 - 6908978

Intron Length:

776

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

TGTTCTTCAACT

Flanking Amino Acid:

YLHKFLMSLLTFLNNFQTAK

Intron Amino Acid Position:

1040

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

78.2

0.7

79.9

32.6

Major PPT

0.99

0.5

88.9

28.2

Minor 5ss

40.3

-1.1

3.1

56.2

42.2

Minor BPS

75.3

0.87

1.4

89.22

35.1

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047562

6857320 - 6944542

87223

ENSAPLT00000034428

6857320 - 6944542

87223

ENSAPLT00000034128

6860267 - 6944542

84276

ENSAPLT00000005335

6857320 - 6944542

87223