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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6914431_6914946_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6914431 - 6914946

Intron Length:

516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAATTCTA

5'SS Class:

major

3'SS Sequence:

TAGAGCTCACCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TCTTGCTCATTC

Flanking Amino Acid:

LKFEIKEVCLCKKKTEETVL

Intron Amino Acid Position:

787

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.2

64.2

41.6

Major BPS

79.7

0.74

79.6

35.6

Major PPT

58.1

0.18

1.1

48.5

44.5

Minor 5ss

40.8

-1

3.1

60.2

Minor BPS

-0.2

2.2

62.01

44.1

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005335

6857320 - 6944542

87223

ENSAPLT00000047562

6857320 - 6944542

87223

ENSAPLT00000034428

6857320 - 6944542

87223

ENSAPLT00000034128

6860267 - 6944542

84276