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Intron Name: Anas_platyrhynchos_platyrhynchos_11_6921118_6922807_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6921118 - 6922807

Intron Length:

1690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGAC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCTCACTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTAAT

U12 Branch Point Sequence:

TCCTTCTCACTA

Flanking Amino Acid:

SSHHLSLPKQYIAHVVTLKL

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

78.2

29.5

Major BPS

0.47

1.2

69.9

35.3

Major PPT

72.2

0.5

0.8

66.8

34.2

Minor 5ss

32.3

-2

3.3

42.9

44.7

Minor BPS

48.4

-0.1

1.8

58.18

42.5

Associated Gene:

Gene:

VPS13C

Ensembl Gene ID:

ENSAPLG00000004988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005335

6857320 - 6944542

87223

ENSAPLT00000047562

6857320 - 6944542

87223

ENSAPLT00000034428

6857320 - 6944542

87223

ENSAPLT00000034128

6860267 - 6944542

84276