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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6923602_6925019_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6923602 - 6925019
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCCCTTAA
5'SS Class:
weak_major
3'SS Sequence:
GTCTGGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTAGTTACAT
Flanking Amino Acid:
DVFLERRYALTIRSGQKLLK
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.4
54.9
40.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.6
0.49
0.9
65.1
41.2
Minor 5ss
39.5
-1.2
2.9
46.8
43.8
Minor BPS
43.9
-0.3
2.4
66.03
43.9

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223