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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6926812_6932251_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6926812 - 6932251
Intron Length:
5440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGACAAC
5'SS Class:
weak_major
3'SS Sequence:
CTTAAGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GAATTCTTAAGT
Flanking Amino Acid:
MHRMTFITLTLPVSASARLY
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.1
51.3
39.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.1
0.52
0.9
69.6
41.2
Minor 5ss
40.2
-1.1
3.3
56.3
43
Minor BPS
64.1
0.52
1.6
74.6
41.8

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034428
6857320 - 6944542
87223