About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6926812_6933662_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6926812 - 6933662
Intron Length:
6851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTCATTATA
5'SS Class:
weak_major
3'SS Sequence:
CTTAAGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GAATTCTTAAGT
Flanking Amino Acid:
LLSVLNSTKVQPVSASARLY
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.3
64.9
40.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.1
0.52
0.9
69.6
41.2
Minor 5ss
37
-1.5
2.8
49
40.7
Minor BPS
64.1
0.52
1.6
74.6
41.8

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276