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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6931442_6931495_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6931442 - 6931495
Intron Length:
54

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACACAGC
5'SS Class:
weak_major
3'SS Sequence:
ACTGGTAATGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTCCCGTGAACA
Flanking Amino Acid:
CLDSLSAYWNKKMFFRPVSA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.2
53.5
43.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
59.2
0.21
1
52.3
41.3
Minor 5ss
40.4
-1.1
3.2
55.3
42.8
Minor BPS
47.9
-0.1
2.2
61.44
44.5

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005335
6857320 - 6944542
87223