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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6932138_6932251_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6932138 - 6932251
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGACAAC
5'SS Class:
weak_major
3'SS Sequence:
CTAATCCTTGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTCCTAGCT
Flanking Amino Acid:
MHRMTFITLTFLKVCIFRPV
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.1
51.3
39.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
54.4
0.1
1.7
62
39.5
Minor 5ss
40.2
-1.1
3.3
56.3
43
Minor BPS
64.6
0.54
1.9
88.51
36.3

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223