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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6933823_6934643_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6933823 - 6934643
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GAATGCTGACTT
Flanking Amino Acid:
RPFKGHDHSKDKPKEEKKDT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
79.3
31.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
28.2
-2.5
2.8
32.2
42.5
Minor BPS
44.5
-0.3
2
59.77
43.4

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223
ENSAPLT00000034128
6860267 - 6944542
84276