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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6933823_6939169_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6933823 - 6939169
Intron Length:
5347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GAATGCTGACTT
Flanking Amino Acid:
EEALQKAAEKDKPKEEKKDT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.4
44.6
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
33
-1.9
3.4
49.4
46.4
Minor BPS
44.5
-0.3
2
59.77
43.4

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005335
6857320 - 6944542
87223