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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6940190_6943123_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6940190 - 6943123
Intron Length:
2934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATTACGT
5'SS Class:
weak_major
3'SS Sequence:
CTGTTTTATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTAACTTAACA
Flanking Amino Acid:
NLQIKENALVNKLTLKIPWK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.1
54.7
42.4
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
69.4
0.44
1.1
71
38.1
Minor 5ss
41.6
-0.9
3.1
56.9
41.7
Minor BPS
70.8
0.65
1.5
78.59
37

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223