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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6943172_6944442_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6943172 - 6944442
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTTCTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
KSQLKLGIWGGNVALDNLQI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
76.2
0.59
0.8
73
30.9
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
VPS13C
Ensembl Gene ID:
ENSAPLG00000004988
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034128
6860267 - 6944542
84276
ENSAPLT00000005335
6857320 - 6944542
87223
ENSAPLT00000047562
6857320 - 6944542
87223
ENSAPLT00000034428
6857320 - 6944542
87223