About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7084497_7084770_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7084497 - 7084770
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGGTAC
5'SS Class:
major
3'SS Sequence:
GTTTACTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTCCCTAAATG
Flanking Amino Acid:
TLDYYMLRNGDILEYKKKQR
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
62.7
38.6
Major BPS
70
0.5
1
67
39.8
Major PPT
74.9
0.56
0.9
69.1
36.7
Minor 5ss
42.7
-0.8
3.1
49.5
47.1
Minor BPS
66.2
0.37
1.7
72.74
40.2

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145