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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7086366_7087263_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7086366 - 7087263
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
GGTTCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTTTGTCTATCT
Flanking Amino Acid:
LKAKLHTDDDLNWLDHSRTF
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
72.6
38.2
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
75.9
0.58
1
69.1
41.8
Minor 5ss
34.6
-1.8
2.9
48.3
41.7
Minor BPS
49.5
0.04
2.3
80.25
42

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145