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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7088649_7095244_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7088649 - 7095244
Intron Length:
6596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAATACT
5'SS Class:
major
3'SS Sequence:
CCCATTTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CATTCTTAAACA
Flanking Amino Acid:
VEHKHKPGFLDFQKEYYFCL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
71.5
38.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.9
0.4
1
68.3
37.3
Minor 5ss
39
-1.2
2.9
48.9
41
Minor BPS
64.7
0.46
1.7
71.96
40.5

Associated Gene:

Gene:
TLN2
Ensembl Gene ID:
ENSAPLG00000004060
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004420
7081433 - 7182577
101145